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AnnotationEditor.java

/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */

package org.apache.uima.caseditor.editor;

import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;

import org.apache.uima.cas.CAS;
import org.apache.uima.cas.Type;
import org.apache.uima.cas.TypeSystem;
import org.apache.uima.cas.text.AnnotationFS;
import org.apache.uima.caseditor.CasEditorPlugin;
import org.apache.uima.caseditor.editor.action.DeleteFeatureStructureAction;
import org.apache.uima.caseditor.editor.annotation.DrawingStyle;
import org.apache.uima.caseditor.editor.annotation.EclipseAnnotationPeer;
import org.apache.uima.caseditor.editor.context.AnnotationEditingControlCreator;
import org.apache.uima.caseditor.editor.contextmenu.IModeMenuListener;
import org.apache.uima.caseditor.editor.contextmenu.IShowAnnotationsListener;
import org.apache.uima.caseditor.editor.contextmenu.ModeMenu;
import org.apache.uima.caseditor.editor.contextmenu.ShowAnnotationsMenu;
import org.apache.uima.caseditor.editor.outline.AnnotationOutline;
import org.apache.uima.caseditor.editor.util.AnnotationComparator;
import org.apache.uima.caseditor.editor.util.AnnotationSelection;
import org.apache.uima.caseditor.editor.util.FeatureStructureTransfer;
import org.apache.uima.caseditor.editor.util.Span;
import org.eclipse.core.resources.IResource;
import org.eclipse.core.resources.IResourceChangeEvent;
import org.eclipse.core.resources.IResourceChangeListener;
import org.eclipse.core.resources.IResourceDelta;
import org.eclipse.core.resources.IResourceDeltaVisitor;
import org.eclipse.core.resources.ResourcesPlugin;
import org.eclipse.core.runtime.CoreException;
import org.eclipse.jface.action.Action;
import org.eclipse.jface.action.IAction;
import org.eclipse.jface.action.IMenuManager;
import org.eclipse.jface.action.MenuManager;
import org.eclipse.jface.text.IPainter;
import org.eclipse.jface.text.Position;
import org.eclipse.jface.text.information.InformationPresenter;
import org.eclipse.jface.text.source.Annotation;
import org.eclipse.jface.text.source.AnnotationPainter;
import org.eclipse.jface.text.source.IAnnotationAccess;
import org.eclipse.jface.text.source.IAnnotationAccessExtension;
import org.eclipse.jface.text.source.IAnnotationModel;
import org.eclipse.jface.text.source.IAnnotationModelExtension;
import org.eclipse.jface.text.source.ISourceViewer;
import org.eclipse.jface.text.source.SourceViewer;
import org.eclipse.jface.viewers.ISelection;
import org.eclipse.jface.viewers.StructuredSelection;
import org.eclipse.swt.SWT;
import org.eclipse.swt.custom.StyleRange;
import org.eclipse.swt.custom.StyledText;
import org.eclipse.swt.dnd.DND;
import org.eclipse.swt.dnd.DragSource;
import org.eclipse.swt.dnd.DragSourceEvent;
import org.eclipse.swt.dnd.DragSourceListener;
import org.eclipse.swt.dnd.Transfer;
import org.eclipse.swt.events.KeyEvent;
import org.eclipse.swt.events.KeyListener;
import org.eclipse.swt.events.MouseEvent;
import org.eclipse.swt.events.MouseListener;
import org.eclipse.swt.events.MouseMoveListener;
import org.eclipse.swt.graphics.Color;
import org.eclipse.swt.graphics.GC;
import org.eclipse.swt.graphics.Point;
import org.eclipse.swt.graphics.Rectangle;
import org.eclipse.swt.widgets.Canvas;
import org.eclipse.swt.widgets.Composite;
import org.eclipse.swt.widgets.Display;
import org.eclipse.ui.IEditorInput;
import org.eclipse.ui.IEditorPart;
import org.eclipse.ui.IEditorReference;
import org.eclipse.ui.ISelectionListener;
import org.eclipse.ui.IWorkbenchActionConstants;
import org.eclipse.ui.IWorkbenchPage;
import org.eclipse.ui.IWorkbenchPart;
import org.eclipse.ui.IWorkbenchWindow;
import org.eclipse.ui.PlatformUI;
import org.eclipse.ui.part.FileEditorInput;
import org.eclipse.ui.texteditor.IStatusField;
import org.eclipse.ui.texteditor.ITextEditorActionConstants;
import org.eclipse.ui.texteditor.ITextEditorActionDefinitionIds;
import org.eclipse.ui.texteditor.IWorkbenchActionDefinitionIds;
import org.eclipse.ui.texteditor.StatusTextEditor;
import org.eclipse.ui.views.contentoutline.IContentOutlinePage;

/**
 * An editor to annotate text.
 *
 * TODO:
 * add an action to increase left side of an annotation
 * add an action to increase right side of an annotation
 * add an action to decrease left side on an annotation
 * add an action to decrease right side on an annotation
 */
00120 public final class AnnotationEditor extends StatusTextEditor implements ICasEditor, ISelectionListener {
  /**
   * This action annotates the selected text with a defined tag.
   */
00124   private class AnnotateAction extends Action {
    private StyledText mTextWidget;

    /**
     * Initializes a new instance.
     *
     * @param textWidget
     */
00132     AnnotateAction(StyledText textWidget) {
      mTextWidget = textWidget;
    }

    /**
     * Executes this action, adds an annotation of the marked span.
     */
    @Override
00140     public void run() {
      if (isSomethingSelected()) {
        Point selection = mTextWidget.getSelectionRange();

        // get old annotations of current type for this area
        // if there is something ... the delete them and add
        Collection<AnnotationFS> oldAnnotations = getDocument().getAnnotation(
                  getAnnotationMode(), new Span(selection.x, selection.y));

        if (!oldAnnotations.isEmpty()) {
          getDocument().removeFeatureStructures(oldAnnotations);
        }

        int start = selection.x;
        int end = start + selection.y;

        AnnotationFS annotation = getDocument().getCAS().createAnnotation(getAnnotationMode(),
                start, end);

        getDocument().addFeatureStructure(annotation);

        setAnnotationSelection(annotation);
      }
    }

    ICasDocument getDocument() {
      return AnnotationEditor.this.getDocument();
    }
  }

00170   private class SmartAnnotateAction extends Action {

    @Override
    public void run() {

      if (isSomethingSelected()) {

        QuickTypeSelectionDialog typeDialog =
          new QuickTypeSelectionDialog(Display.getCurrent().getActiveShell(),
          AnnotationEditor.this);

        typeDialog.open();
      }
    }
  }

  /**
   * Shows the annotation editing context for the active annotation.
   */
00189   private class ShowAnnotationContextEditAction extends Action {
    private InformationPresenter mPresenter;

    /**
     * Initializes a new instance.
     */
00195     ShowAnnotationContextEditAction() {
      mPresenter = new InformationPresenter(new AnnotationEditingControlCreator());

      mPresenter.setInformationProvider(new AnnotationInformationProvider(AnnotationEditor.this),
              org.eclipse.jface.text.IDocument.DEFAULT_CONTENT_TYPE);
      mPresenter.setDocumentPartitioning(org.eclipse.jface.text.IDocument.DEFAULT_CONTENT_TYPE);
      mPresenter.install(getSourceViewer());
    }

    /**
     * Executes this action, shows context information.
     */
    @Override
00208     public void run() {
      mPresenter.showInformation();

      // the information presenter closes ... if
      // the subject control sends a keyDown event

      // this action is triggered with
      // a keyEvent send by the subject control

      // inside this handler the presenter gets installed on
      // the subject control during that the presenter registers
      // a key listener on the subject control

      // the presenter closes now because the keyEvent to trigger
      // this action is also sent to the presenter

      // to avoid this behavior this action is reposted
      // to the END of the ui thread queue

      // this does not happen if for the action is no key explicit
      // configured with setActivationKey(...)

      // TODO:
      // This does not work for mac or linux
    }
  }

  /**
   * This <code>IDocumentChangeListener</code> is responsible to synchronize annotation in the
   * document with the annotations in eclipse.
   */
00239   private class DocumentListener extends AbstractAnnotationDocumentListener {
    
    /**
     * Adds a collection of annotations.
     *
     * @param annotations
     */
    @Override
00247     public void addedAnnotation(Collection<AnnotationFS> annotations) {
      IAnnotationModelExtension annotationModel = (IAnnotationModelExtension) getDocumentProvider().getAnnotationModel(getEditorInput());
      
      Map<Annotation, Position> addAnnotationMap = new HashMap<Annotation, Position>();
      
      for (AnnotationFS annotation : annotations) {
        addAnnotationMap.put(new EclipseAnnotationPeer(annotation), new Position(annotation.getBegin(), 
                annotation.getEnd() - annotation.getBegin()));
      }
      
      annotationModel.replaceAnnotations(null, addAnnotationMap);
    }

    /**
     * Removes a collection of annotations.
     *
     * @param deletedAnnotations
     */
    @Override
00266     public void removedAnnotation(Collection<AnnotationFS> deletedAnnotations) {

      if (getSite().getPage().getActivePart() == AnnotationEditor.this) {
        mFeatureStructureSelectionProvider.clearSelection();
      } else {
        mFeatureStructureSelectionProvider.clearSelectionSilently();
      }

      highlight(0, 0); // TODO: only if removed annotation was selected

      IAnnotationModelExtension annotationModel = (IAnnotationModelExtension) getDocumentProvider().getAnnotationModel(getEditorInput());
      
      Annotation removeAnnotations[] = new Annotation[deletedAnnotations.size()];
      int removeAnnotationsIndex = 0;
      for (AnnotationFS annotation : deletedAnnotations) {
        removeAnnotations[removeAnnotationsIndex++] = new EclipseAnnotationPeer(annotation);
      }
      
      annotationModel.replaceAnnotations(removeAnnotations, null);
    }

    /**
     *
     * @param annotations
     */
    @Override
00292     public void updatedAnnotation(Collection<AnnotationFS> annotations) {

      removedAnnotation(annotations);
      addedAnnotation(annotations);

      List<ModelFeatureStructure> structures = new LinkedList<ModelFeatureStructure>();

      for (AnnotationFS annotation : annotations) {
        structures.add(new ModelFeatureStructure(getDocument(), annotation));
      }

      selectionChanged(getSite().getPage().getActivePart(), new StructuredSelection(structures));
    }

00306     public void changed() {
      mFeatureStructureSelectionProvider.clearSelection();

      syncAnnotations();
    }
  }

  /**
   * Sometimes the wrong annotation is selected ... ????
   */
00316   private class FeatureStructureDragListener implements DragSourceListener {
    private boolean mIsActive;

    private AnnotationFS mCandidate;

    FeatureStructureDragListener(final StyledText textWidget) {
      textWidget.addKeyListener(new KeyListener() {
        public void keyPressed(KeyEvent e) {
          if (e.keyCode == SWT.ALT) {
            mIsActive = true;

            textWidget.setCursor(Display.getCurrent().getSystemCursor(SWT.CURSOR_HAND));
          }
        }

        public void keyReleased(KeyEvent e) {
          if (e.stateMask == SWT.ALT) {
            mIsActive = false;
            textWidget.setCursor(null);
          }
        }
      });

      textWidget.addMouseMoveListener(new MouseMoveListener() {

        public void mouseMove(MouseEvent e) {
          if (mIsActive) {
            // try to get the position inside the text

            int offset;

            // Workaround: It is possible check that is text under the cursor ?
            try {
              offset = textWidget.getOffsetAtLocation(new Point(e.x, e.y));
            }
            catch (IllegalArgumentException e2) {
              return;
            }

            Map<Integer, AnnotationFS> view = getDocument().getView(getAnnotationMode());

            mCandidate = view.get(offset);

            if (mCandidate != null) {
              textWidget.setSelectionRange(mCandidate.getBegin(), mCandidate.getEnd()
                      - mCandidate.getBegin());
            }
          }
        }

      });
    }

    public void dragStart(DragSourceEvent event) {
      if (mIsActive) {
        event.doit = mCandidate != null;
      } else {
        event.doit = false;
      }
    }

    public void dragSetData(DragSourceEvent event) {
      event.data = mCandidate;
    }

    public void dragFinished(DragSourceEvent event) {
    }
  }

00385   private class AnnotationAccess implements IAnnotationAccess, IAnnotationAccessExtension {

    public Object getType(Annotation annotation) {
      return null;
    }

    public boolean isMultiLine(Annotation annotation) {
      return false;
    }

    public boolean isTemporary(Annotation annotation) {
      return false;
    }

    public int getLayer(Annotation annotation) {

      if (annotation instanceof EclipseAnnotationPeer) {

        EclipseAnnotationPeer eclipseAnnotation = (EclipseAnnotationPeer) annotation;

        // ask document provider for this
        // getAnnotation must be added to cas document provider

        AnnotationStyle style = getDocumentProvider().getAnnotationStyle(getEditorInput(),
                  eclipseAnnotation.getAnnotationFS().getType());

        return style.getLayer();
      }
      else {
        return 0;
      }
    }

    public Object[] getSupertypes(Object annotationType) {
      return new Object[0];
    }

    public String getTypeLabel(Annotation annotation) {
      return null;
    }

    public boolean isPaintable(Annotation annotation) {
      assert false : "Should never be called";

      return false;
    }

    /**
     * This implementation imitates the behavior without the
     * {@link IAnnotationAccessExtension}.
     */
00436     public boolean isSubtype(Object annotationType, Object potentialSupertype) {

      Type type = getDocument().getCAS().getTypeSystem().getType((String) annotationType);

      return mShowAnnotationsMenu.getSelectedTypes().contains(type) ||
          getAnnotationMode().equals(type);
    }

    public void paint(Annotation annotation, GC gc, Canvas canvas, Rectangle bounds) {
      assert false : "Should never be called";
    }
  }

  /**
   * Listens for resource remove/delete event, if the input file for the
   * editor is removed the editor will be closed.
   */
00453   private static class CloseEditorListener implements IResourceChangeListener {

    private AnnotationEditor editor;

    public CloseEditorListener(AnnotationEditor editor) {
      this.editor = editor;
    }

    public void resourceChanged(IResourceChangeEvent event) {
      IResourceDelta delta = event.getDelta();
      try {
        IResourceDeltaVisitor visitor = new IResourceDeltaVisitor() {
          public boolean visit(IResourceDelta delta) throws CoreException {
            if (delta.getFlags() != IResourceDelta.MARKERS
                    && delta.getResource().getType() == IResource.FILE) {
              if (delta.getKind() == IResourceDelta.REMOVED) {
                IResource resource = delta.getResource();

                IEditorInput input = editor.getEditorInput();

                if (input instanceof FileEditorInput) {
                  FileEditorInput fileInput = (FileEditorInput) input;

                  if (resource.equals(fileInput.getFile())) {
                    editor.close(false);
                  }
                }
              }
            }

            return true;
          }
        };

        delta.accept(visitor);
      } catch (CoreException e) {
        CasEditorPlugin.log(e);
      }
    }
  }

  private Type mAnnotationMode;

  /**
   * The outline page belonging to this editor.
   */
00499   private IContentOutlinePage mOutlinePage;

  private IAnnotationEditorModifyListener mEditorListener;

  /**
   * TODO: Do we really need this position variable ?
   */
00506   private int mCursorPosition;

  private ICasDocument mDocument;

  boolean mIsSomethingHighlighted = false;

  private StyleRange mCurrentStyleRange;

  private FeatureStructureSelectionProvider mFeatureStructureSelectionProvider;

  private AnnotationPainter mPainter;

  private ShowAnnotationsMenu mShowAnnotationsMenu;

  private DocumentListener mAnnotationSynchronizer;

  private CloseEditorListener closeEditorListener;

  private Collection<Type> shownAnnotationTypes = new HashSet<Type>();
  
  /**
   * Creates an new AnnotationEditor object.
   */
00529   public AnnotationEditor() {
      CasDocumentProvider provider =
                  CasDocumentProviderFactory.instance().getDocumentProvider();

    setDocumentProvider(provider);
  }

  @Override
  public CasDocumentProvider getDocumentProvider() {
        return (CasDocumentProvider) super.getDocumentProvider();
  }

  /**
   * Retrieves annotation editor adapters.
   *
   * @param adapter
   * @return an adapter or null
   */
  @Override
  @SuppressWarnings("unchecked")
00549   public Object getAdapter(Class adapter) {


    if (IContentOutlinePage.class.equals(adapter) && getDocument() != null) {
      if (mOutlinePage == null) {
        mOutlinePage = new AnnotationOutline(this);
      }

      return mOutlinePage;
    }
    else if (CAS.class.equals(adapter) && getDocument() != null) {
      return getDocument().getCAS();
    }
    else {
      return super.getAdapter(adapter);
    }

  }

  @Override
  protected ISourceViewer createSourceViewer(Composite parent,
          org.eclipse.jface.text.source.IVerticalRuler ruler, int styles) {
    SourceViewer sourceViewer = new SourceViewer(parent, ruler, styles);

    sourceViewer.setEditable(false);

    mPainter = new AnnotationPainter(sourceViewer, new AnnotationAccess());

    sourceViewer.addPainter(mPainter);

    return sourceViewer;
  }

  /**
   * Configures the editor.
   *
   * @param parent
   */
  @Override
00588   public void createPartControl(Composite parent) {
    super.createPartControl(parent);

    /*
     * this is a workaround for the quickdiff assertion if nothing was changed, how to do this
     * better ? is this the right way ?
     */
    showChangeInformation(false);

    getSourceViewer().getTextWidget().addKeyListener(new KeyListener() {
      public void keyPressed(KeyEvent e) {
        int newCaretOffset = getSourceViewer().getTextWidget().getCaretOffset();

        if (newCaretOffset != mCursorPosition) {
          mCursorPosition = newCaretOffset;
          cursorPositionChanged();
        }
      }

      public void keyReleased(KeyEvent e) {
        // not implemented
      }

    });

    getSourceViewer().getTextWidget().addMouseListener(new MouseListener() {
      public void mouseDown(MouseEvent e) {
        int newCaretOffset = getSourceViewer().getTextWidget().getCaretOffset();

        if (newCaretOffset != mCursorPosition) {
          mCursorPosition = newCaretOffset;
          cursorPositionChanged();
        }
      }

      public void mouseDoubleClick(MouseEvent e) {
        // not needed
      }

      public void mouseUp(MouseEvent e) {
        // not needed
      }

    });

    DragSource dragSource = new DragSource(getSourceViewer().getTextWidget(), DND.DROP_COPY);

    Transfer[] types = new Transfer[] { FeatureStructureTransfer.getInstance() };

    dragSource.setTransfer(types);

    dragSource.addDragListener(new FeatureStructureDragListener(getSourceViewer().getTextWidget()));

    getSite().getPage().addSelectionListener(this);

    getSourceViewer().getTextWidget().setEditable(false);
    getSourceViewer().setEditable(false);

    getSite().setSelectionProvider(mFeatureStructureSelectionProvider);

    if (getDocument() != null) {
      mShowAnnotationsMenu = new ShowAnnotationsMenu(
              getDocumentProvider().getEditorAnnotationStatus(getEditorInput()),
              getDocument().getCAS().getTypeSystem(), shownAnnotationTypes);
      mShowAnnotationsMenu.addListener(new IShowAnnotationsListener() {

        public void selectionChanged(Collection<Type> selection) {
          
          // if changes selection is either larger, or smaller
          // if larger an annotation type was added
          // if smaller one was removed
          if (shownAnnotationTypes.size() < selection.size()) {
            List<Type> clonedCollection = new ArrayList<Type>(selection);
            clonedCollection.removeAll(shownAnnotationTypes);
            
            Type addedAnnotationType = clonedCollection.get(0);
            showAnnotationType(addedAnnotationType, true);
            getDocumentProvider().addShownType(getEditorInput(), addedAnnotationType);
          }
          else if (selection.size() < shownAnnotationTypes.size()) {
            List<Type> clonedCollection = new ArrayList<Type>(shownAnnotationTypes);
            clonedCollection.removeAll(selection);
            
            Type removedAnnotationType = clonedCollection.get(0);
            showAnnotationType(removedAnnotationType, false);
            getDocumentProvider().removeShownType(getEditorInput(), removedAnnotationType);
          }
          
          // Repaint after annotations are changed
          mPainter.paint(IPainter.CONFIGURATION);
          
          EditorAnnotationStatus status =
                  getDocumentProvider().getEditorAnnotationStatus(getEditorInput());

          getDocumentProvider().setEditorAnnotationStatus(getEditorInput(),
                  new EditorAnnotationStatus(status.getMode(), selection));

          if (mEditorListener != null)
            mEditorListener.showAnnotationsChanged(selection);
        }
      });

      EditorAnnotationStatus status = getDocumentProvider()
              .getEditorAnnotationStatus(getEditorInput());

      setAnnotationMode(getDocument().getType(status.getMode()));
    }
  }

  // TODO: still not called always, e.g. on mouse selection
  private void cursorPositionChanged() {
    mFeatureStructureSelectionProvider.setSelection(getDocument(), getSelectedAnnotations());
  }

  /**
   * Checks if the current instance is editable.
   *
   * @return false
   */
  @Override
00708   public boolean isEditable() {
    return false;
  }

  @Override
  protected void doSetInput(IEditorInput input) throws CoreException {
    super.doSetInput(input);

    mDocument = (ICasDocument) getDocumentProvider().getDocument(input);

    if (mDocument != null) {

      closeEditorListener = new CloseEditorListener(this);
      ResourcesPlugin.getWorkspace().addResourceChangeListener(closeEditorListener,
              IResourceChangeEvent.POST_CHANGE);

      syncAnnotations();
      
      mAnnotationSynchronizer = new DocumentListener();

      getDocument().addChangeListener(mAnnotationSynchronizer);

      Collection<String> shownTypes = getDocumentProvider().getShownTypes(input);

      for (String shownType : shownTypes) {
        
        // Types can be deleted from the type system but still be marked 
        // as shown in the .dotCorpus file, in that case the type
        // name cannot be mapped to a type and should be ignored.
        Type type = getDocument().getType(shownType);
        if (type != null)
          shownAnnotationTypes.add(type);
      }
    }
  }

  @Override
  protected void editorContextMenuAboutToShow(IMenuManager menu) {
    super.editorContextMenuAboutToShow(menu);

    TypeSystem typeSytem = getDocument().getCAS().getTypeSystem();

    // mode menu
    MenuManager modeMenuManager = new MenuManager("Mode");
    menu.appendToGroup(IWorkbenchActionConstants.MB_ADDITIONS, modeMenuManager);

    ModeMenu modeMenu = new ModeMenu(typeSytem);
    modeMenu.addListener(new IModeMenuListener(){

            public void modeChanged(Type newMode) {
          IAction actionToExecute = new ChangeModeAction(newMode, newMode.getShortName(),
                  AnnotationEditor.this);

      actionToExecute.run();
            }});

    modeMenuManager.add(modeMenu);

    // annotation menu
    MenuManager showAnnotationMenu = new MenuManager("Show Annotations");
    menu.appendToGroup(IWorkbenchActionConstants.MB_ADDITIONS, showAnnotationMenu);
    showAnnotationMenu.add(mShowAnnotationsMenu);
  }

  /**
   * Updates the status line.
   */
00775   private void updateStatusLineModeItem() {
    // TODO: refactore this
    IStatusField statusField = getStatusField(AnnotationEditorActionContributor.ID);

    // can be null directly after doSetInput()
    if (statusField != null) {
      statusField.setText(getAnnotationMode().getShortName());
    }
  }

  /**
   * Returns the current <code>AnnotationDocument</code> of this editor.
   *
   * @return current <code>AnnotationDocument</code>
   */
00790   public ICasDocument getDocument() {
    return mDocument;
  }

  /**
   * Returns the current annotation type.
   *
   * @return - current annotation type
   */
00799   public Type getAnnotationMode() {
    return mAnnotationMode;
  }

  /**
   * Sets the new annotation type.
   *
   * @param type
   */
00808   protected void setAnnotationMode(Type type) {
    // TODO: check if this type is a subtype of Annotation

    mAnnotationMode = type;

    highlight(0, 0);

    setProjectEditorStatus();

    updateStatusLineModeItem();

    syncAnnotationTypes();

    fireAnnotationTypeChanged(getAnnotationMode());

    mShowAnnotationsMenu.setEditorAnnotationMode(type);
  }

  public Collection<Type> getShownAnnotationTypes() {
        return mShowAnnotationsMenu.getSelectedTypes();
  }

  /**
   * @param type
   */
00833   private void fireAnnotationTypeChanged(Type type) {
    if (mEditorListener != null) {
      mEditorListener.annotationModeChanged(type);
    }
  }

  /**
   * Set the shown annotation status of a type.
   * 
   * @param type
   * @param isVisible if true the type is shown, if false the type
   * it not shown
   */
00846   private void showAnnotationType(Type type, boolean isVisible) {
    if (isVisible) {
      AnnotationStyle style = getDocumentProvider().getAnnotationStyle(getEditorInput(), type);
      mPainter.addDrawingStrategy(type.getName(),
              DrawingStyle.valueOf(style.getStyle().name()).getStrategy());
      mPainter.addAnnotationType(type.getName(), type.getName());
      java.awt.Color color = style.getColor();
      mPainter.setAnnotationTypeColor(type.getName(), new Color(null, color.getRed(),
              color.getGreen(), color.getBlue()));
      shownAnnotationTypes.add(type);
    }
    else {
      mPainter.removeAnnotationType(type.getName());
      shownAnnotationTypes.remove(type);
    }
  }

  /**
   * Synchronizes all annotations which the eclipse annotation painter.
   */
00866   public void syncAnnotationTypes() {

    mPainter.removeAllAnnotationTypes();

    for (Type displayType : mShowAnnotationsMenu.getSelectedTypes()) {
      showAnnotationType(displayType, true);
    }

    if (!mShowAnnotationsMenu.getSelectedTypes().contains(getAnnotationMode())) {
      showAnnotationType(getAnnotationMode(), true);
    }

    mPainter.paint(IPainter.CONFIGURATION);
  }

  private void syncAnnotations() {
    // Remove all annotation from the model
    IAnnotationModel annotationModel = getDocumentProvider().getAnnotationModel(getEditorInput());
    ((IAnnotationModelExtension) annotationModel).removeAllAnnotations();

    // Add all annotation to the model
    // copy annotations into annotation model
    final Iterator<AnnotationFS> mAnnotations = mDocument.getCAS().getAnnotationIndex()
            .iterator();

    while (mAnnotations.hasNext()) {
      AnnotationFS annotationFS = mAnnotations.next();
      annotationModel.addAnnotation(new EclipseAnnotationPeer(annotationFS), new Position(
              annotationFS.getBegin(), annotationFS.getEnd() - annotationFS.getBegin()));
    }
  }
  
  /**
   * @param listener
   */
00901   public void addAnnotationListener(IAnnotationEditorModifyListener listener) {
    mEditorListener = listener;
  }

  /**
   * Returns the selection.
   *
   * @return - the selection
   */
00910   public Point getSelection() {
    return getSourceViewer().getTextWidget().getSelection();
  }

  /**
   * Highlights the given range in the editor.
   *
   * @param start
   * @param length
   */
00920   private void highlight(int start, int length) {
    ISourceViewer sourceViewer = getSourceViewer();

    assert sourceViewer != null;

    StyledText text = sourceViewer.getTextWidget();

    if (mCurrentStyleRange != null) {
      // reset current style range
      StyleRange resetedStyleRange = new StyleRange(mCurrentStyleRange.start,
              mCurrentStyleRange.length, null, null);

      text.setStyleRange(resetedStyleRange);
    }

    if (length != 0) {
      mCurrentStyleRange = new StyleRange(start, length, text.getSelectionForeground(), text
              .getSelectionBackground());

      text.setStyleRange(mCurrentStyleRange);
    }
  }

  /**
   * Retrieves the currently selected annotation.
   *
   * TODO: make this private ??? clients can use selections for this ...
   *
   * @return the selected annotation or null if none
   */
00950   public List<AnnotationFS> getSelectedAnnotations() {
    List<AnnotationFS> selection = new ArrayList<AnnotationFS>();

    if (isSomethingSelected()) {
      Point selectedText = getSourceViewer().getTextWidget().getSelectionRange();

      Span selecectedSpan = new Span(selectedText.x, selectedText.y);

      Collection<AnnotationFS> selectedAnnotations = getDocument().getAnnotation(
              getAnnotationMode(), selecectedSpan);

      for (AnnotationFS annotation : selectedAnnotations) {
        selection.add(annotation);
      }

      Collections.sort(selection, new AnnotationComparator());
    } else {
      Map<Integer, AnnotationFS> view = getDocument().getView(getAnnotationMode());

      AnnotationFS annotation = view.get(mCursorPosition);

      if (annotation == null) {
        annotation = view.get(mCursorPosition - 1);
      }

      if (annotation != null) {
        selection.add(annotation);
      }
    }

    return selection;
  }

  /**
   * Text is not editable, cause of the nature of the annotation editor. This does not mean, that
   * the annotations are not editable.
   *
   * @return false
   */
  @Override
00990   public boolean isEditorInputModifiable() {
    return false;
  }

  /**
   * Notifies the current instance about selection changes in the workbench.
   *
   * @param part
   * @param selection
   */
01000   public void selectionChanged(IWorkbenchPart part, ISelection selection) {
    if (selection instanceof StructuredSelection) {
      AnnotationSelection annotations = new AnnotationSelection((StructuredSelection) selection);

      // only process these selection if the annotations belong
      // to the current editor instance
      if (getSite().getPage().getActiveEditor() == this && !annotations.isEmpty()) {
        highlight(annotations.getFirst().getBegin(), annotations.getLast().getEnd()
                - annotations.getFirst().getBegin());

        // move caret to new position when selected outside of the editor
        if (AnnotationEditor.this != part) {
          
          // Note: The caret cannot be placed between line delimiters
          // See bug UIMA-1470
          int newCaretOffset = annotations.getLast().getEnd();
          String text = getSourceViewer().getTextWidget().getText();
          
          if (newCaretOffset > 0 && newCaretOffset < text.length()) {
            char beforeCaret = text.charAt(newCaretOffset -1);
            char afterCaret = text.charAt(newCaretOffset);
            
            final int cr = 0x0D;
            final int lf = 0x0A;
            if (beforeCaret == cr && afterCaret == lf) {
              // In case the caret offset is in the middle
              // of a multiple-char line delimiter place caret
              // before
              newCaretOffset = newCaretOffset -1;
            }
          }
          
          // check bounds, if out of text do nothing
          getSourceViewer().getTextWidget().setCaretOffset(newCaretOffset);
        }
      }
    }
  }

  private boolean isSomethingSelected() {
    // TODO: sometimes we get a NPE here ... mh
    // getSourceViewer() returns null here ... but why ?
    return getSourceViewer().getTextWidget().getSelectionCount() != 0;
  }

  private void setProjectEditorStatus() {
    // TODO: do not replace if equal ... check this
    EditorAnnotationStatus status = new EditorAnnotationStatus(getAnnotationMode().getName(),
            mShowAnnotationsMenu.getSelectedTypes());

    getDocumentProvider().setEditorAnnotationStatus(getEditorInput(), status);
  }

  /**
   * Creates custom annotation actions:
   *
   * Annotate Action
   * Smart Annotate Action
   * Delete Annotations Action
   * Find Annotate Action
   */
  @Override
01062   protected void createActions() {

    super.createActions();

    mFeatureStructureSelectionProvider = new FeatureStructureSelectionProvider();
    getSite().setSelectionProvider(mFeatureStructureSelectionProvider);

    // create annotate action
    AnnotateAction annotateAction = new AnnotateAction(getSourceViewer().getTextWidget());

    final String annotateActionID = "Enter";

    annotateAction.setActionDefinitionId(annotateActionID);

    setAction(annotateActionID, annotateAction);
    setActionActivationCode(annotateActionID, '\r', SWT.CR,
            SWT.NONE);

    SmartAnnotateAction smartAnnotateAction = new SmartAnnotateAction();
    smartAnnotateAction.setActionDefinitionId(ITextEditorActionDefinitionIds.SMART_ENTER);
    setAction(ITextEditorActionDefinitionIds.SMART_ENTER, smartAnnotateAction);

    setActionActivationCode(ITextEditorActionDefinitionIds.SMART_ENTER, '\r', SWT.CR,
            SWT.SHIFT);

    // create delete action
    DeleteFeatureStructureAction deleteAnnotationAction = new DeleteFeatureStructureAction(
            getDocument());

    getSite().getSelectionProvider().addSelectionChangedListener(deleteAnnotationAction);

    deleteAnnotationAction.setActionDefinitionId(IWorkbenchActionDefinitionIds.DELETE);

    setAction(IWorkbenchActionDefinitionIds.DELETE, deleteAnnotationAction);
    setActionActivationCode(IWorkbenchActionDefinitionIds.DELETE, (char) 0, SWT.CR, SWT.NONE);

    // create show annotation context editing action
    ShowAnnotationContextEditAction annotationContextEditAction =
            new ShowAnnotationContextEditAction();

    annotationContextEditAction.setActionDefinitionId(ITextEditorActionDefinitionIds.QUICK_ASSIST);
    setAction(ITextEditorActionDefinitionIds.QUICK_ASSIST, annotationContextEditAction);

    // create find annotate action
    FindAnnotateAction findAnnotateAction = new FindAnnotateAction(this, getSourceViewer().getFindReplaceTarget());
    findAnnotateAction.setActionDefinitionId(IWorkbenchActionDefinitionIds.FIND_REPLACE);
    setAction(ITextEditorActionConstants.FIND, findAnnotateAction);
  }

  @Override
  public void dispose() {
    // remove selection listener
    getSite().getWorkbenchWindow().getSelectionService().removeSelectionListener(this);

    getSite().getPage().removeSelectionListener(this);

    ICasDocument document = getDocument();

    if (document != null) {
      document.removeChangeListener(mAnnotationSynchronizer);
    }

    if (closeEditorListener != null) {
      ResourcesPlugin.getWorkspace()
              .removeResourceChangeListener(closeEditorListener);
    }

    super.dispose();
  }

  void setAnnotationSelection(AnnotationFS annotation) {
    mFeatureStructureSelectionProvider.setSelection(getDocument(), annotation);
  }

  /**
   * Creates a list of all {@link AnnotationEditor} which are currently opened.
   */
01139   public static AnnotationEditor[] getAnnotationEditors() {

    ArrayList<AnnotationEditor> dirtyParts = new ArrayList<AnnotationEditor>();
    IWorkbenchWindow windows[] = PlatformUI.getWorkbench().getWorkbenchWindows();
    for (IWorkbenchWindow element : windows) {
      IWorkbenchPage pages[] = element.getPages();
      for (IWorkbenchPage page : pages) {
        IEditorReference[] references = page.getEditorReferences();

        for (IEditorReference reference : references) {

          IEditorPart part = reference.getEditor(false);

          if (part instanceof AnnotationEditor) {
            AnnotationEditor editor = (AnnotationEditor) part;
            dirtyParts.add(editor);
          }
        }
      }
    }

    return dirtyParts.toArray(new AnnotationEditor[dirtyParts.size()]);
  }
}

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